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Johns Hopkins University vía Coursera
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Introduction to Reproducibility in Cancer Informatics

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  • Introduction to this Course
    • In this first section, we will discuss the goals of this course and define what we mean by reproducibility.
  • Organizing your project
    • In this section we discuss motivation and strategies for project organization.
  • Using notebooks
    • In this section we discuss the motivation for using notebooks and integrated development environments to enhance the reproducibility of your project.
  • Making your project open source with GitHub
    • In this section we will describe how GitHub can make a project open source and encourage reproducibility.
  • Managing package versions
    • In this section we discuss two strategies for managing package versions in a project.
  • Writing durable code
    • In this section we discuss aspects of code that can make it more durable to enhance the reproducibility of a project.
  • Code review
    • This section discusses the importance of code review for creating reproducible analyses.
  • Documenting analysis
    • This section discusses how to document analyses to enhance their reproducibility.